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… Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ … They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on individual gene …

… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … In a recent Scientific Advances article , a team led by McDaniel and his former graduate student Sarah Carey, now …

… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), … the standard analysis pipeline but can be done on request by the PI. We currently use the ‘Base Modification Analysis’ …

… to the atmosphere. Peat bogs also serve the ecosystem by minimizing flood risks and filtering water. Peat formed … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …

… our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — …

… Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … field, growers can easily distinguish the cotton species by traits such as flower color, plant height, or fiber …

… about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … for prediction of fungal lifestyles based on genome sequences.” The Fungal Knowledge Gap The fungal kingdom … mushrooms and yeasts, outnumber their ancient relatives by nearly 10 to one in sequenced collections. Yet the …

… nine countries. Learn more about the Hungate1000 work led by AgResearch collaborators Bill Kelly and Sinead Leahy and … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … rumen microbes are awesome and this is just another example why.” …

… lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing … The project was funded by the U.S. Department of Energy Joint Genome Institute, a …

… is particularly interested in understanding how, when and why microbes decide to produce which metabolites. …