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Frequently Asked Questions: Proposal Submission
… The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. … How much will it cost me to sequence or synthesize my target or obtain metabolomics data? …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … the world. One expanded group is of viruses associated with bacteria; until now, most of the known RNA viruses have been … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … activities. Aside from being a key component of the marine food web base, they also feature in many nutrient … interested in better characterizing the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and …
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Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
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Fungal & Algal Program
… The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … resource hub that provides access to publicly available sequenced algal genomes and genome annotations generated by …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The … which can affect pathogenic and symbiotic bacterial interactions with animals and plants, or cause metal … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a …
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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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Genome Sequences of 42 Bacteria Isolated from Sorghum bicolor Roots
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Eelgrass Proves to Be Much Younger Than We Thought
… locations.  One group investigated changes in protein sequences, while others analyzed single point mutations … Facility at Lawrence Berkeley National Laboratory, provided sequence resources — including the eelgrass genome assembly … by a fellowship to M.K. in the Helmholtz School for Marine Data Science (grant number HIDSS-0005) and by a grant …
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An Integrated Dataset to Understand Ecosystem Interaction
… water-quality regulation. Focusing on the rhizosphere and interactions between the trees, microbes and soil chemistry … that can enhance our understanding of plant-microbe interactions — with potential applications in sustainable …
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Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals
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