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Synthetic Biology Informatics Group
… tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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CSP New Investigator Call
… the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not limited to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to … scientists have shown at least two microorganisms from different phyla are capable of methanogenesis. Using … You don’t have tunnel vision anymore, only seeing the microbes you can grow in the lab — suddenly you see …
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Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust resident tiny algae. … photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem …
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Tracking the Origins of Methane-Producing Microbes
… user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… soil management practices. Read the full release from Anuvia  here .     …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Fungal Friends or Foes in Plant Roots
… fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … but they’re not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
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Occurrence and expression of genes encoding methyl-compound production in rumen bacteria
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