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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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A Collaboration to Improve Plant Genome Annotations Across Species
This resource also helps in performing cross-species comparative transcriptomics. *The HudsonAlpha Genome … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … types, and analytical protocols that permit gene expression analysis across plants and add additional experimentally …
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User Programs
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … perennial grass  Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … M. sinensis and a tetraploid  M. sacchariflorus , another species of  Miscanthus that was sequenced. Understanding the …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … M. sinensis and a tetraploid M. sacchariflorus , another species of Miscanthus that was sequenced. Understanding the …
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Genome analysis of the marine bacterium Kiloniella laminariae and first insights into comparative genomics with related Kiloniella species
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DAN: Alright, so I think we’ve covered a little bit about why they’re important. But one of the things I did want to … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have …
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Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
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Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species.
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Phylogenomics and genetic analysis of solvent-producing Clostridium species
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program …
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