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Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … Science Group supports researchers exploring how to convert sequence into functional assessments. The team has a … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …

The Sequence to Function: Applications and Analysis for the …

… an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells … article . Publication: Shahan R et al.  A single cell Arabidopsis root atlas reveals developmental trajectories in …

… of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … ecotypes because, historically, they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA … bioinformatics tools designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …

Every year, the JGI sequences around 35,000 samples — from plants, algae, …

… to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …

… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he …

Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … This is due to the overreliance on a few species like Arabidopsis or rice as homology models for computational … Weng from Univ. of Austin, who previously led work on  Arabidopsis and  Panicum hallii , contributed panicle time …

… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …

… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …