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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … are standardized and span the full kingdom, they are well-suited to train machine learning models that predict …
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This … Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, now, here’s Natural Prodcast … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … MycoCosm Data Portal …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … Work at Lawrence Livermore National Laboratory was conducted …
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Fungal diversity and function in metagenomes sequenced from extreme environments
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … The CSP and FICUS calls are open to both domestic and international …
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User Executive Committee Charter
… Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal review procedures, and the annual user …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … Laccaria bicolor on MycoCosm … Laccaria bicolor has a symbiotic relationship with poplar …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … program for higher education that develops skills in fungal biology and genomics.  Myco-Ed :  The Mycological … MycoEd receives organizational and developmental support from KBase (The …
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