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Work With the JGI! Tips for a Winning CSP Proposal
… and the environment several times a year. A few proposal calls have deadlines coming up – in January, March, and … project manager Miranda Harmon-Smith, who helps shepherd CSP projects along. …
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Partnerships: Myco-Ed
Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist observations All … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page …
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Boosting Small Molecule Production in Super “Soup”
… 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of Texas at Austin and Michael … in yeast, a key platform organism that has been used historically for making sustainable products in industry.” From … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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Natural Prodcast Episode 9: Roger Linington
… met Roger, when we were both postdocs at Scripps Institution of Oceanography. Roger was splitting his time between … some hybrid of the two. Likely somewhere in between. DAN:  Halfway in between. Yeah. ROGER:  But at the moment, you … either both of those pools have to increase in size dramatically, or there has to be a significant collapsing of that …
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Gene Expression: From On-Off Switch to Dial
… characteristics in an organism. The experiment was led by Hal Alper, professor and associate chair at the University of … glycerol and galactose. Although they are historically well-studied, Alper’s team discovered new gene targets …
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Natural Prodcast Episode 23: Aaron Puri
… if I’m going to slip a day on releasing it into the feeds, but I’m trying, you guys. Schedules are hard. But, I’m … and explore the chemistry of quorum sensing systems, specifically the acyl homoserine lactones.  If you listened to … like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix …
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Natural Prodcast Episode 4: Nancy Keller
… listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and … for fungi. And we talk a lot about some of the technical challenges to that, most of which seem to be history.   I … well, two things. My PhD work was with a fungal pathogen called Cochliobulis heterostrophis . This is a very well …
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Natural Prodcast Episode 8: Eric Schmidt
… listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and … is sometimes true. Other people, like Eric Schmidt, love a challenge, and love the idea of working on harder organisms, … of people know who are not specialists, but they’re also called (unfairly) sea squirts, because if you kill them and …
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Natural Prodcast Episode 15: Katherine Duncan
Udwary: Right. Kate Duncan: But most people that know me call me Kate. Dan Udwary: Great. So we’ve got Kate here … at University, so it must be about a month, a month and a half later. In September, I went to a centralized computer … to sort of compare, conceptually, that data with genomics and the kind of things that I do with genome …
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New Lineages of Life Group
… in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of … … Publications … For further details, please reach out to the Group Lead …
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Metabolomics
…  Through this identification, metabolomics enables functional genome annotation, improves understanding of the … play in diverse biological systems, sheds light on nutrient cycling, and leads to the discovery of new molecules … (LC-MS) based methods in combination with advanced computational analysis.   Overview of metabolomics products At …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate world-class science. … PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy …
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