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Natural Prodcast Episode 17: Cassandra Quave
… find me. And really it was my third grade science fair project where I first looked into a microscope and just fell … do is really look for opportunities through grant funding programs to build up research capacity with our global … or so. But JGI, our focus as a DOE, Department of Energy, user facility is in energy and environment, and not …
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Natural Prodcast Episode 12: Nadine Ziemert
… to talk to us way back, when there was going to be a JGI user meeting. That didn’t quite happen, this year. But do … start. Databases like, I think, JGI’s ABC also has a nice overview of all these different gene clusters. That helps. I … collaborate, let us know. Find out more at jgi.doe.gov/user-programs . Thanks, and see you next time. … Episode …
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Genomes OnLine Database (GOLD) v.8: overview and updates
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Environmental Genomics Group
… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better … Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A standardized …
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Natural Prodcast Episode 19: Bill Fenical
… why it’s so hard to succeed, and we talk about an ongoing project I’ve been working with him on as an exploration into … I would like me to continue about this sort of historical overview? DAN UDWARY: Yeah, whatever you have to say. I … who, today, run full-fledged marine chemical ecology programs. Two of the great students are in Georgia, in …
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Natural Prodcast Episode 3: The Primer, Part 3
… produce secondary metabolites. Do you recognize this? DNA 🡺 RNA 🡺 Protein ALISON: This is central dogma. DNA to RNA to … we need people from outside of the JGI to come to us with projects that will help us actually drive this strategic … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …
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Global overview and major challenges of host prediction methods for uncultivated phages
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Natural Prodcast Episode 7: Ben Shen
… benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and … be useless unless you make the invention available to broad user groups. So, I view the project that we are working on … collaborate, let us know! Find out more at jgi.doe.gov/user-programs . Thanks, and see you next time!  Transcribed in …
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Natural Prodcast Episode 22: Alison Narayan
… enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities of flavin … because I have this question, we have this discussion internally in my group quite frequently. OK, so imagine this … has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our …
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Strain Engineering
The developed strains represent an additional phase of user-accessible project types, in which DNA-based molecules can be … integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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Secondary Metabolites Advisory Committee
… on the effective management and strategic objectives of the programs. The Committee serves as the Program's key external advisory panels and advocates of Program strategy, … do not perform management functions nor do they direct the Programs’ management teams on how to operate and manage the …
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Micro-Scale Applications Group
Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately measure … is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA …
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