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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses …
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Natural Prodcast Episode 12: Nadine Ziemert
… to talk to us way back, when there was going to be a JGI user meeting. That didn’t quite happen, this year. But do … start. Databases like, I think, JGI’s ABC also has a nice overview of all these different gene clusters. That helps. I … collaborate, let us know. Find out more at jgi.doe.gov/user-programs . Thanks, and see you next time. … Episode …
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Natural Prodcast Episode 15: Katherine Duncan
… on a few metabolites and doing a kind of comprehensive overview of that has been quite interesting. Dan Udwary: … years to improve gender equality of people entering science programs. So actually, the number of women entering science … of Energy Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Lab. You …
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Genomes OnLine Database (GOLD) v.8: overview and updates
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Fungal Friends or Foes in Plant Roots
… other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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Natural Prodcast Episode 3: The Primer, Part 3
… produce secondary metabolites. Do you recognize this? DNA 🡺 RNA 🡺 Protein ALISON: This is central dogma. DNA to RNA to … we need people from outside of the JGI to come to us with projects that will help us actually drive this strategic … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …
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Microbiome Data Science Team
… efforts include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes … of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative …
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Global overview and major challenges of host prediction methods for uncultivated phages
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Natural Prodcast Episode 4: Nancy Keller
… so, so cheap to sequence. Right now, for our particular projects, we’re not doing that right now, but we might. I … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You … collaborate, let us know! Find out more at jgi.doe.gov/user-programs .   Thanks, and see you next time!  … Episode …
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Natural Prodcast Episode 22: Alison Narayan
… enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities of flavin … because I have this question, we have this discussion internally in my group quite frequently. OK, so imagine this … has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our …
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JGI Portals
… developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality … databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to …
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