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Exploring Phages at JGI
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the … the strategy of lysogeny. The ability of the virus to tag along with the host has earned this strategy a riff, …
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Back to the Future! A Sorghum Story
… specifically to turn their biomass into sustainable biofuel and bioproducts. John Mullet, a biologist at Texas …
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Jane Grimwood Named HudsonAlpha Genomics Chair
JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human Genome Center … The DNA sequence and biology of human chromosome 19 The DNA sequence and comparative analysis of human …
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Exploring the Diversity of the American Prairie’s Switchgrass
… ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, …
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Natural Prodcast Episode 3: The Primer, Part 3
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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Dan Rokhsar
… and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. … joined the faculty of University of California, Berkeley in 1989, as a member of the Physics Department and in 2002 he … genomics is targeted towards the development of improved biofuel feedstocks and understanding and ultimately …
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JGI@25: Strengthening Soybean
… rotation, but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s … of projects that point to the potential of seed oils as biofuel. After analyzing the original sequence, Gary Stacey …
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An Integrated Dataset to Understand Ecosystem Interaction
… their genetic diversity. They hold economic value as both biofuel feedstock and their role in carbon sequestration. … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … For plants, boosting this relationship could improve biofuel feedstocks growing in nutrient-poor fields. “This is … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole …
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