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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute … system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, I … because we have the resources as a user facility. The Metagenome Program team provided guidance and encouragement to …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… humans could do the same on an industrial scale to produce biofuels . Since one of the challenges of developing … paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists … that ability into industry, specifically to generate biofuels,” Hess said.  (Only 90 of those genes were actually …
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Gene Expression: From On-Off Switch to Dial
… pathways for making high-value bioproducts including biofuels. In addition, the team says that this experiment … gene expression on two energy-filled sugars used in biofuel production, glycerol and galactose. Although they … expression in metabolic pathways that could be used for biofuel optimization and other applications. … This work was …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT). Q:  Do you offer scholarships and/or …
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Single Cell Research Group
… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., … Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). Woyke T ., Doud D. F. R., Schulz F. The trajectory of …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the … supported by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734. …
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Exploring Phages at JGI
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Back to the Future! A Sorghum Story
… specifically to turn their biomass into sustainable biofuel and bioproducts. John Mullet, a biologist at Texas …
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A Collaboration to Improve Plant Genome Annotations Across Species
… 12 plants, which are JGI Flagship Plants, mostly related to biofuels and feedstocks. And then we expanded that to include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq … community is of utmost importance. The scope of handling 18 different species is beyond the capacity of a single lab. …
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Natural Prodcast Episode 3: The Primer, Part 3
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Exploring the Diversity of the American Prairie’s Switchgrass
… ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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