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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … family would be a set of gene clusters across different species, which all encode the production of either the same … who was the postdoc leading that project. So they were studying this phenomenon called “disease suppression”, where …
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Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
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The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont
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Phylogeny, morphology, virulence, ecology, and host range of Ordospora pajunii (Ordosporidae), a microsporidian symbiont of Daphnia spp.
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I … shown today is it's more a quorum sensing within a single species. DAN: Within a species. Genus? BETSY PARKINSON: So …
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Eelgrass Proves to Be Much Younger Than We Thought
… The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … Summary Eelgrass is unique in that there are not many species able to occupy the regions where eelgrass … use the genome assembly to calibrate their genetic clock.  Various researchers around the globe were each working on …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … allows for revealing patterns that would be invisible when studying species in isolation. The comparative power has … new capabilities through partnerships with bacterial symbionts, and how others revolutionized their biology by …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry based metabolomics Below is a … Q1  (median/75th percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize nutrients from that … and dead organisms to free up their nutrients; mycorrhizal symbionts shuttle water and nutrients to trees; plant …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil … the project life cycle. During regular web conferences, various JGI subject matter experts walked the class through …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome … in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are still extant (whereas …
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