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The Chlamydomonas genome project: a decade on
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Data Ecosystem
… specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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Viruses Reprogram Cells into Different Virocells
But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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A call for standardized classification of metagenome projects
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Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … find me. And really it was my third grade science fair project where I first looked into a microscope and just fell … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have … help solve energy and environmental challenges. The 1KFG project represents affiliations at over 180 organizations in … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on …
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Chapter Five The Sphagnum Genome Project A New Model for Ecological and Evolutionary Genomics
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The Sphagnome Project: enabling ecological and evolutionary insights through a genus‐level sequencing project
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Metabolomics
JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small …
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