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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have … through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as a biofuel. To … of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … interested in learning more about the fungal endophytes of soybean and how they deter two significant pathogens, the …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a … to request the capabilities and expertise of both national user facilities in one research proposal.  Submit research proposals  here that … free of charge, including data such as fully annotated genome assemblies or differential gene expression results. …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship … Laccaria bicolor on MycoCosm …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been …
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When “The Blob” Made It Hotter Under the Water
… marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of … ocean known as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Data Ecosystem
… users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein … specifically optimized for high-performance computing environments. …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … Lab), have unveiled PhycoCosm in the Nucleic Acids Research journal. The genome portal reinforces the JGI’s new …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … by routing the carbon away from methanogens. In The ISME Journal, a team led by researchers from the University of …
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