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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …
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Protein structure determination using metagenome sequence data
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the … Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a … National Institute for Agricultural Research (INRAE) focused on in-depth exploration of ecology-related groups of … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group … gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate … for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and associated tools, which track samples …
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Homepage
…   Gain access to omics technologies generating community data at zero cost …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists …
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Identifying genomic data use with the Data Citation Explorer
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and characterizing enzymes and pathways …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single …
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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