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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … chat with him.  I kind of lost count of how many times Brad used the words “fun” and “magical” when describing his … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data analyses compile original data for improving fungal …
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Network Modeling of Complex Data Sets
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … Joint Genome Institute (JGI) , a DOE Office of Science User Facility. She took special interest in it because she … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Synthetic Biology Lab
… and assembly group: Our production group operates as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the …
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The JGI Data Portal: Improving User Experience
… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … data, the team noticed that a large percentage of Phytozome users who were seeking to download all the data associated …
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Protein structure determination using metagenome sequence data
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … about you just give us a little bit of your background because you do-- you're classically trained as a synthetic … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … National Institute for Agricultural Research (INRAE) focused on in-depth exploration of ecology-related groups of … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of … project. These advancements contribute to the development of new biofuels and sustainable biochemicals. The DNA …
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