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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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Rice SNP-seek database update: new SNPs, indels, and queries
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Picking Up Threads of Cotton Genomics
American Pima ( G. barbadense .) These are two of the five major lineages of cotton;  G. tomentosum ,  G. … the simplest cotton genome ( G. raimondii ) several years ago. Studying the cotton genomes provides breeders … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Year in Review: JGI’s 2018 Progress Report Available Now
The latest edition of the JGI Progress Report highlights notable research and … by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and … roles in the global sulfur cycle. Copies are available online – click here to go download one from the archive of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … environmental samples around the world, resulting in a five-fold increase of RNA virus diversity. “The world of … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … significant part of UC Merced’s history and already in its five years has made a really strong impact,” she said. “I look …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … expediting BGC and biosynthesis research.  Summary Over the years several secondary metabolites databases have been made …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … try to find more molecules like this. It became sort of a “golden age” of drug discovery, antibiotic discovery.  DAN: …
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Standardized naming of microbiome samples in Genomes OnLine Database.
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual … Lab. Like the mural, the JGI’s accomplishments over 25 years span a broad, colorful range. Behind every genomic … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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