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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the … found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the challenges of …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… destroyer” and it has served as just that on a catastrophic scale from Baja California north into Oregon and beyond. The … lead the Forest Pathology and Mycology Laboratory. Together with his colleague Douglas Schmidt and UC Davis professor … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Metagenomics
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Meeting Code of Conduct
… entire event. All participants are expected to be familiar with this policy. Our aim in hosting an event is to build a …
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A roadmap for equitable reuse of public microbiome data
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Promoting the Power of Viral Metagenomics
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Mining Metagenomes for Cas Proteins
… of California (UC), Berkeley, which is also affiliated with the Innovative Genomics Institute. The Impact The … study senior author Jennifer Doudna’s lab, and he worked with co-first author David Burstein, then a postdoctoral fellow with Doudna and longtime JGI collaborator Jill Banfield, …
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