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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional … a taxonomically diverse suite of microbial chassis strains for elevated opportunity for expression. Research Team    … For further details, please reach out to the Group Lead …
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Science Programs
… Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … impact of user projects, develop cutting-edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … virus sequences vary widely. In a previous effort, an international consortium recommended specific … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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Analyze Data
… to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can empower the global … We have two key priorities:  The JGI is involved in efforts to integrate data in support of new research questions … Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of Sample QC …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from … by the Energy Biosciences Institute and the DOE Center for Advanced Bioenergy and Bioproducts Innovation, which is …
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Microbial species delineation using whole genome sequences
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the …
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Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
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Bacillus anthracis genome organization in light of whole transcriptome sequencing
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Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa
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