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MeCorS: Metagenome-enabled error correction of single cell sequencing reads
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Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even lighter threads in … symbionts in sulfur-rich mangrove sediments not far from his lab when he first encountered the bacteria. “When I … level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab also used a labeling …
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Natural Prodcast Episode 22: Alison Narayan
… we have our conversation with Professor Alison Narayan, from the University of Michigan. I hope she’ll accept this … run things in like little Eppendorf tubes, or in 96, or 384 well plates. But then the fun really starts when you’re … or something, but they confirmed that it had just been completely consumed. DAN UDWARY: Grad students need calories …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… 824 new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 … sequence fragments can lead to high-quality yet incomplete genome sequences which could bias the analyses. … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Marine Microbe Contains Multitudes
But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the blue-lit twilight … their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, … but use sunlight to help in the struggle to survive near the surface. The other two ecotypes, on the other hand, …
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Metabolomics Program
… mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — … with genomics, transcriptomics, imaging, and other data from EcoFAB systems can provide novel insights into the … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using …
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CSP Functional Genomics
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Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
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Examples: Successful LOIs & Submissions
… calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral … led to the development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the … Facility, and research scientist Frederik Schulz in Woyke’s Single Cells group had generated and analyzed single …
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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