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Simon Roux

Dr. Roux joined the JGI in 2017 to lead viral genomics research as part … the development of novel computational tools to identify virus sequences, the design of new experimental approaches … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …

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iPHoP: A Matchmaker for Phages and their Hosts

… To understand virus-host dynamics, computation helps fill in what … important environmental processes like carbon fixation , nitrogen cycling and methane production. Meanwhile, … use a variety of approaches to match a virus with a potential host. This can result in different predictions. …

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Partnerships: Myco-Ed

Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students … and understanding of fungal diversity, ecology, and potential applications. … The Department of Energy Systems …

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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state

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Microorganisms Involved in Methylmercury Demethylation and Mercury Reduction are Widely Distributed and Active in the Bathypelagic Deep Ocean Waters

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Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids

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Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage

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Rapid Response of Nitrogen Cycling Gene Transcription to Labile Carbon Amendments in a Soil Microbial Community

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Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments