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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … their base are microscopic, photosynthetic algae. But human-induced climate change , a new study suggests, is displacing … the global ocean. Phytoplankton communities in warmer waters, including the tropics, tend to be dominated by …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry based metabolomics Below is a … ) 108/161 Viral Enrichment Draft quality assembly from virus pools/plaques obtained from a single host, many …
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Pharmaceutical Biotransformation is Influenced by Photosynthesis and Microbial Nitrogen Cycling in a Benthic Wetland Biomat
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … important environmental processes like  carbon fixation , nitrogen cycling and methane production. Meanwhile, … use a variety of approaches to match a virus with a potential host. This can result in different predictions. …
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Partnerships: Myco-Ed
… Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data … Beyond providing a scalable solution for production of high-quality …
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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … synthetic biology, a team studying microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. The top image on the left … characterization and validation of the functional potential of these new lineages. …
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Microorganisms Involved in Methylmercury Demethylation and Mercury Reduction are Widely Distributed and Active in the Bathypelagic Deep Ocean Waters
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Floodplain nitrifiers harbor the genetic potential for utilizing a wide range of organic nitrogen compounds
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part … the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for … B.S. in Microbiology, Université Blaise Pascal, France M.S. in …
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