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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … among early-diverging plant lineages makes it ideal for comparative genomics studies, offering insight into genes …
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FICUS-NERSC/KBASE
… Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems …
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … into our integrated microbial genomes system, which is our comparative analysis system. Once that is completed, the …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint … to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace …
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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm … — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … As a host, and a little bit of my newer work is focused on plants, but in both cases, you know, these molecules are how …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … And perhaps using biocatalysts we can do it in a cleaner, greener way. That’s one of our motivations, as well. Alison: …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … local marine environment. I went out and picked up marine plants, I picked up animals. And I asked the simple … Episode Transcript … In this episode, Natural Prodcast talks to the legendary Prof William Fenical …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … sojae, which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint … Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … This resource also helps in performing cross-species comparative transcriptomics. *The HudsonAlpha Genome … hosted. The first one is the JGI plant portal called  Phytozome . There, you can query a single gene and look at …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … like MycoCosm , the JGI’s online fungal genomics resource platform, reveals a stark imbalance. More recently evolved …
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