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The integrated microbial genomes system: an expanding comparative analysis resource
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint … notes, and I’ll put up some structures and link to some resources you can use to get caught up, if you’re not … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust resident … collect and catalog samples, and look for patterns in algal communities, including the algae-associated microbiomes that influence algal diversity and gene expression. Sailing from pole to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … into force in 2014. There’s now a website that has a lot of resources that you can access. As an ethnobotanist, a lot of … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to … accelerate our efforts to characterize poorly-studied algal and viral genomes, and integrate with key DOE Office … transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … and standardized structure of the dataset position it as a resource for AI-driven approaches to predicting fungal … systems for energy and other applications. All annotations, comparative tools, and visualizations are publicly available …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … they don’t have available in their labs, and we use our resources to help them solve those problems. It’s a …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … be the first publicly available, river-focused microbial resource that provides information at multiple scales from … immediately explore and reuse the data from the GROWdb for comparative analyses with their own data on the KBase …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … Episode Transcript … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research … with their microbiomes. In addition, his group conducts comparative genomic research to understand the evolutionary … Brachypodium distachyon is a small annual grass that is well …
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