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… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … on sustaining our record of excellence and respect, and for principles of integrity, safety and reliability. As … Fagnan, Chief Informatics Officer Len Pennacchio, Deputy of Genomic Technologies Axel Visel, Deputy for Science Programs …

The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic … science depicted. The two-story JGI mural was commissioned for the JGI’s 25th anniversary and done by Berkeley-based artist Nigel …

… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes …

The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal …

… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the …

For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … Armaleo and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy … available online at  PhycoCosm (for the alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of …

… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … regulation and cataloging them in JGI’s fungal portal MycoCosm. … The work conducted by the US Department of …

User Support Analysis group provides computational analysis for new technology development and JGI user science … for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of …

FY2023 Spending Profile The JGI is funded primarily by the DOE …

… could be used to treat these highly resistant bacterial and fungal pathogens. And we’ve actually just wrapped up a year, … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …

… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …