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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Earth BioGenome Project: Sequencing life for the future of life
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating … by HudsonAlpha scientists, with the help of funding from Mars Wrigley. The annotated genome has been updated to …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … samples to the JGI. PI sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … including the algae-associated microbiomes that influence algal diversity and gene expression. Sailing from …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … aims to advance genome science-based scientific research from a broad range of disciplines. Three calls fall under … on scientific merit, judged through independent peer review, and evaluated based on their DOE relevance.  For …
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Beyond the tip of the iceberg; a new view of the diversity of sulfite- and sulfate-reducing microorganisms
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … genomes of the key community participants and enabling future metagenomics studies.   …
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The future of legume genetic data resources: Challenges, opportunities, and priorities
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … working with Salamov and Grigoriev at the JGI strongly influenced her perspective about what it means to be a …
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