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Perspective on taxonomic classification of uncultivated viruses
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, … publicly available data in the JGI’s  IMG/M database , information the Probst lab used to search for and find 13 …
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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How to Submit Sequencing Samples
… is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have any questions, …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … Chemistry and Molecular Pharmacology there. We talked about several different pieces of her work, including … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so the adage goes, it must be a … ocean could fix less carbon when infected. Little is known about virus-infected microbial cells that are transformed …
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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10 From JGI on the 2019 Highly Cited Researchers List
… gradient across the United States. Go here to learn more about the project . Igor Grigoriev and Asaf Salamov were … Committee on Taxonomy of Viruses to outline the minimum amount of information for an uncultivated virus genome, including the …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research … of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, University …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate … Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect …
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