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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … where he developed novel tools for large-scale in situ gene expression analysis in multicellular organisms. During …
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Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle
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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … in the future? For other things than assembly size or gene count? (In the interactive tree) A: Sajeet is … While are still working on finalizing the tree and related publication the tree is still in development and not …
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching … species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome … that can’t live without their host. They have no extra genes hanging around, they still dedicate 20-30% of their … This is Episode 6 of Natural Prodcast, our conversation with Marc Chevrette, a …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … sampling in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … plant cell wall materials including lignin, cellulose and hemicellulose. The Impact N. crassa is the model organism for …
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Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary … This the third episode of Natural Prodcast, and the third and final part of our …
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