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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet …
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IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … communities. This revealed key metabolic pathways and metabolites associated with the tree’s stress response. …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda … written by M. Wayne Davis or commercial options include SnapGene . … How To Use ApE To save your ApE file as a Genbank …
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Improving Microbial Genome Annotations in an Integrated Database Context
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Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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Data Ecosystem
To expand access to integrated data, improve tools and … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development … such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable …
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Tour the IGB
Take a virtual tour of the IGB, home of the DOE Joint Genome … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here . …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the … scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out as one of four program … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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Exometabolomic Analysis of Cross-Feeding Metabolites
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science …
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