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DAP-seq Drives Robust Mapping of Gene Regulation
… and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by these … where transcription factors (TFs) — the proteins that flip genetic switches — bind DNA were limited to a few model … Complementing this, researchers have profiled over 160,000 high-quality single-nuclei transcriptomes, enabling the …
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JGI Accepts 17 Proposals for Community Science Program
… Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to … that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned soils in …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … barriers for researchers who previously lacked access to high-quality mitochondrial annotations. Summary … due to features like self-splicing introns and multiple genetic codes. Adding to the challenge, mitochondrial …
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Game On: High School Students Drive Everglades Metagenomics Study
… (AICE) Biology class at Florida’s Boca Raton Community High School. The course had a defined set of objectives, and … acquire the permits to do so. They used images from Google maps to plan their route, and had to adapt when they noticed … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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A single-base resolution map of an archaeal transcriptome
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Natural Prodcast Episode 17: Cassandra Quave
… without giving any benefit back to the owners of that genetic material? So this is also relevant to bacteria. If … challenge is, as the listeners know, even when you find a highly potent active compound that has a good cytotoxicity … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, … analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … the hybrid origin of giant miscanthus ( M. x giganteus ), a high-yield candidate bioenergy feedstock known for its … numerous wild Miscanthus lineages to better understand the genetic diversity of the grass, which could help in …
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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … technology in order to enhance the quality of single-cell genomes and directly link functional information with … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This …   Overview of sequencing products The JGI operates highly scaled short- and long-read sequencing pipelines. … to a multiplexed DAP-seq (multiDAP-seq) method allowing high-throughput processing of samples in 96-well plates on …
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