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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric … and technology development pioneered at the U.S. DOE genome centers at Lawrence Berkeley National Laboratory , …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
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Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9–1
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, …
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Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … process used by most plant species.) Understanding how the interplay between gene flow, population statistics, and …
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Mixed-Linkage Glucan Is the Main Carbohydrate Source and Starch Is an Alternative Source during Brachypodium Grain Germination
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Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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