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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… sojae, which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis . …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … . “The broad applicability of the method is likely the most important, but also the ability to understand the complicated evolutionary history of strawberry in such detail is …
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Picking Up Threads of Cotton Genomics
… all five cotton lineages and of cotton D are available for comparative analysis on JGI’s plant data portal  Phytozome , … that relate directly and indirectly to genetic diversity, evolution, wild germplasm utilization and increasing the … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … molecule, lignin. Understanding Lentinula genomes and their evolution could provide strategies for converting plant … across genomes also provided an opportunity to assess commonalities. The enzymes that Lentinula fungi rely on to …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … in sustainable agriculture and clean energy. These evolutionary strategies that helped plants thrive under … this research provides critical insights into the common ancestry of these algae and land plants. Researchers …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … of the genome , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our … that reduces water loss, compared to the process used by most plant species.) Understanding how the interplay between …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences …
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Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean
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Olpidium, The Key to the Origin of Terrestrial Fungi
Facility, found that the fungus Olpidium is a link in the evolution and transition of fungi from aquatic to … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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