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Phylogeny and physiology of candidate phylum ‘Atribacteria’ (OP9/JS1) inferred from cultivation-independent genomics
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that …
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User Support Analysis Group
… We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to …
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The Impact of Genome Analyses on Our Understanding of Ammonia-Oxidizing Bacteria*
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … the Viral Genomics group at the JGI to further explore the ecological and evolutionary drivers of virus-host dynamics … B.S. in Microbiology, Université Blaise Pascal, France M.S. in …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … decided to do an environmental microbial community (metagenomic) soil study in an untouched region of the … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development of tools and …
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Exometabolite niche partitioning among sympatric soil bacteria
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