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User Programs
… Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and … Feb 19, 2026 (Proposals due 4/30/26) April 9, 2026  11:59pm PT  Sep 8, 2026 Jan 29, 2027 March 31, 2026 Review Date …
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Special Initiatives & Programs
… support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both eligible for BERSS). Available Resources … . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … using the U.S. Culture Collection Network (USCCN) to nominate their strains for sequencing, as long as they …
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Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Environmental Genomics Group
… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of … properties encoded within those genomes. Our aim is to more fully capture microbial and viral diversity, leading …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … dataset of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of … gene models. The JGI workflow consistently recovered all 15 core mitochondrial genes across the dataset, whereas a …
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A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters
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Trichoderma harzianum transcriptome in response to cadmium exposure
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Transcriptional Responses to Priority Effects in Nectar Yeast
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Synthetic Biology Informatics Group
… gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast … For further details, please reach out to the Group Lead …
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Rapid Evolution of Coral Proteins Responsible for Interaction with the Environment
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