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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. … shows the pyramidalization of phosphines and predictive models that allow you to choose the right phosphine ligand … Episode Transcript … synthesis project with the JGI to explore flavin monooxygenases, and what we all need to do in the future to figure out …
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How to Submit Sequencing Samples
… is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the drop-downs to … Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at the JGI. …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy … genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the … biofuel grasses can be studied from simpler (and smaller) models, Miscanthus has a large and complex genome whose …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… the intricate details of life’s genetic blueprint has long been a significant challenge in genomics. Enter GenomeOcean, a powerful generative model  now available to the global research community able … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Tour the IGB
… Institute. To navigate virtual tours of each floor, click and drag to look around the space, use the graphic rings to move about the space, and your pointing device to zoom in and out. 1st floor 2nd … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into vector of …
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Agrobacterium‐Mediated Transformation of Brachypodium distachyon
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the … Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the filamentous … available at the Fungal Genetics Stock Center. This work was supported by an Energy Biosciences Institute Grant, a …
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