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Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad … tools in support of DOE mission priorities. Data discoverability and accessibility are critical requirements for … Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and government … including User Facilities like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to … Our User Programs entail a competitive, proposal-based process including peer …
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Metagenome Program
… technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … to uncover the complex interactions and functions that shape ecosystems. By decoding the microbial DNA in …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … aim of producing at least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. … need for a more comprehensive exploration of genomic DNA modifications (epigenome).  In  Nature Ecology & Evolution , …
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… to the naked eye, microscopy reveals unexpected complexity At first glance, the slightly murky waters in the tube look … Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory … in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The … library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, which leverages an … scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … professors in laboratory techniques and data analyses compile original data for improving fungal genomic resources … species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. …
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