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CSP Functional Genomics
… to perform state-of-the-art functional genomics research and to help them translate genomic information into … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of … For questions about the appropriateness of projects or experimental design, please contact Tanja Woyke, Deputy for …
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Sequencing Technologies
Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing … applications. The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic …
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Who We Are
Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics Building in … collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint … where we did genome mining together. Marc was the Head of Experimental Genomics there, before he decided to leave for … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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Scientific Advisory Committee
… board convened by the JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, and counsel on the effective management and strategic objectives of the JGI. The SAC …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the … Metabolism in Model Soil Ecosystems,” uses a combination of experimental approaches and large-scale data analysis to …
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … and the herbarium curator there, with a broad range of experimental work on plants for drug discovery in … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Frequently Asked Questions: Proposal Submission
Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at … begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
SIP experiments shed more light on microbial communities than ever before — especially with the prospect of … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … and Malmstrom came away from the workshop with a concrete experimental plan for a ring test, or a survey. Together, …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity … plant roots, as with Arabidopsis thaliana. Using a coupled experimental and computational approach, we employ various … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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IMG/M 4 version of the integrated metagenome comparative analysis system
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