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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … month, just like I promised. Now I just have to make this whole “on-time thing” a habit! I’m really not good at that, … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of …
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A chromosome-level genome assembly of the varied leaved jewelflower, Streptanthus diversifolius, reveals a recent whole genome duplication
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … This work was supported by the Energy Biosciences Institute and the DOE …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Each portal lists a contact, or you can reach out via the form on our website.   …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to … infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete … results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by … this identification, metabolomics enables functional genome annotation, improves understanding of the role small … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse …
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
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Whole genome assembly from 454 sequencing output via modified DNA graph concept
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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