Search

… The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes … to accurately measure environmental microbiome activity levels.This functional assay lets us move beyond cataloging … uncultivated microbes for sequencing based on their level of metabolic activity (BONCAT+FACS). To provide …

… [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and Sheree … disciplines and scales,” said Tanja Woyke , the JGI’s User Programs Deputy. “These proposals highlight the creativity …

… said Tanja Woyke, Deputy Director of JGI’s User Programs. “Many of these projects are large in scale and …

… qSIP quantifies incorporation of isotopes from labeled nutrients into biomass. When paired with … framework of Hungate and colleagues, to quantify heavy isotope incorporation into DNA by active microbial populations … assemblies (Hofmeyr et al. 2020) we are able to quantify isotope incorporation across a range of environmental …

… work, checking such factors as genome size, polymorphism level, sample quality and availability, etc.   During …