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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology …
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Prepublication data sharing
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Clustering Categorical Data
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots … genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   …
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Natural Prodcast Episode 13: Francisco Barona Goméz
Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the …
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …
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