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Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a …
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … representing all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected hurdle: ginormous sex …
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Programs & Platform Leads
… drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, … infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… . Research shows that flagella were lost in other forms of  Chloroflexota that adapted to marine environments … a complex pattern of evolution for genes related to eating plant compounds in both the oceanic and hot spring  … bacteria lack complete biochemical pathways to break down plant material on their own, they likely cooperate with …
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Elucidating Drought-Tolerance Mechanisms in Plant Roots through 1H NMR Metabolomics in Parallel with MALDI-MS, and NanoSIMS Imaging Techniques
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Tracking the Origins of Methane-Producing Microbes
… cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … acetoclastic. All three pathways require the gene cluster for methane production known as Mcr. Until recently, the Mcr … of the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg Biohub, and the U.S. …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … pulling over to the side of the road to collect small weedy plants and bring them back to the lab. The weedy grass was …
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David Goodstein
… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … research efforts expanded to include basal metazoans and plants. Working with a talented team of scientists and … 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve …
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Mission
… and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … of our Community Science Program, characterize organisms (plants and microbes) relevant to the DOE science mission … technologies needed to design, build, and control plants and microbes to produce biofuels, …
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