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Expanding genomics of mycorrhizal symbiosis
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Eucalyptus grandis MYB‐Like and RAN‐Like Zinc Finger Proteins Display Dual Roles in Regulating Plant Immunity and Symbiosis Pathways
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever … of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … stages of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE …
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Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of Sample QC …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a … partner, either a eukaryotic microalga or a cyanobacteria, is known as the “photobiont.” Photobiont and … a century-and-a-half of lichen research, many of the symbiosis’ details remain unclear. For the first time, a …
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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JGI@25: Building a Better Bean
… It also plays an important role in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as … use Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz …
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Tour the IGB
… the frontiers of environmental and energy genomics.  For more information about the science depicted, click here . …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing … But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … representing all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were …
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