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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … feedstock for biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … and evolutionary drivers of virus-host dynamics in soil microbial communities. … B.S. in Microbiology, …
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Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost
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Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species
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Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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JGI Portals
… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … comprehensive access to information regarding genome and metagenome sequencing projects, and their associated …
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Doubling Down on Known Protein Families
… — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing a …
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Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient
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Microbiome–metabolite linkages drive greenhouse gas dynamics over a permafrost thaw gradient
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