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JGI at the AGU Fall Meeting
… on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential … nutrient cycling at an intensively-managed cattle grazing pasture” 2pm Online Only: Malak Tfaily, University of Arizona: “Spatial metabolic profiling in roots reveals plant specific responses to drought at the Biosphere 2 …
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Data Policy
… : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted to … in which data is publicly visible and available in JGI systems. Users not involved with the proposal under which … and embargo policies. Use-restricted data: In past data policies, data were publicly visible in JGI …
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
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Model Fern Reveals Insight into DNA Thievery in Ferns
… fundamental aspects of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii … the C-fern assembly. While they did identify a couple WGD events, these events could not fully account for the size … S.C.; grant 41571049 to Y. Wu); China Agricultural Research Systems (grant CARS-05 to S.C.); the Key R&D Program of …
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Microbiome composition modulates secondary metabolism in a multispecies bacterial community
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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Hiroshi Otani
Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly … H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 … of CouR, a MarR family transcriptional regulator, is modulated through a novel mechanism. Nucleic Acids Res. 44, …
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Micro-Scale Applications Group
Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with various …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics
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Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
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Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes
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