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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …
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Examples: Successful LOIs & Submissions
… Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures … to soil carbon storage during simulated range shifts of plant-fungal symbionts … the gene regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … metabolites produced by bacteria, fungi, algae and plants. These compounds are key to organisms' interactions …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host … but they’re not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some … . They looked for genes known to be involved in fungal-host interactions and identified 84 gene families that were …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… come from livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded … reason for studying rumen: Livestock live off plant matter, and their rumen are highly capable of breaking … has also opened up research offshoots in totally different areas, beyond the project’s initial scope. Sequencing and …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this … Blair (Chief Laboratory Counsel) and Ellen Ford (Operations Area Deputy/Berkeley Lab Deputy Chief Operating Officer). … 2008. Ray won the  Director’s Award for Operations in 2017 in recognition of his tireless efforts to ensure the …
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Fungal & Algal Program
… functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders of plant biomass. These abilities are crucial for sustainable plant biomass production as well as converting biomass into …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … future single-cell projects.” The Berkeley Lab  Biosciences Area has been leading efforts in developing and applying … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … ra-MOR-um) the genus in Latin translates to “plant destroyer” and it has served as just that on a … through their close association with the California bay laurel. Because the oaks are considered “dead-end” …
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The JGI Data Portal: Improving User Experience
… Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is … , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and data and computational needs. Over its … a calendar reminder to download restored files Copy-and-paste curl commands for faster API downloads “Currently, our …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with … they’re eating was different, and what they’re eating are microbes.   And so that led him to come to me with the …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … generated by the OGG initiative — for Ceratopteris richardii, or C-fern — came out in the September issue of Nature …
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