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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … and data  are publicly available through MycoCosm , the JGI’s web portal for fungal genome data.   The Impact This … over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial ribosomal RNA sequences. The …
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JGI Welcomes New UEC Members
… The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their …
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Fungal & Algal Program
… an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a … algal genomes and genome annotations generated by the JGI and by others. The web portal allows users to navigate …
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IMG ER: a system for microbial genome annotation expert review and curation
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Natural Prodcast Episode 3: The Primer, Part 3
… state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … suggestions for others feel free to let me know by emailing jgi[email protected], or reaching out on Twitter to @JGI or me @danudwary. Like I said in the intro to the first …
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Webinar: SIP technologies at EMSL and JGI
… Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage … compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom provided background on the various isotope-related technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this … 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this … Lab. On June 24, in what was billed as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, …
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FICUS Overview
… free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening … whose proposals were accepted for 2024. Harnessing the JGI’s  resources, these researchers will dive into a range … 2024 review. You can also find more information about the JGI’s various proposal calls here. …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut … labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in … and then installed at the  Integrative Genomics Building , JGI’s newly-built home located in the heart of the Berkeley …
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JGI Announces 2025 New Investigator Portfolio
… (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have … whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers will investigate a … and the metabolic pathways of algae. They will harness JGI capabilities such as metatranscriptomics and …
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Metagenome Program
… computational tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …
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