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Natural Prodcast Episode 13: Francisco Barona Goméz
… metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our little section … a bit embarrassed that we recorded this conversation about 10 months ago. I was pretty green at the time and had some … to my daughters– what did they think would be important in 100 years. Would natural products be important for …
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Natural Prodcast Episode 9: Roger Linington
… about the topic we cared about. And that gave us about 12,000 molecules. And that was enough for us to build a … accurate. And so we told people that if they would curate 1000 entries, that that would earn them authorship of the …
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Products
… vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative … metabolites and unidentified features in spectra. 167/214 Metabolomics Non-polar metabolite analysis Relative …
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Danielle Goudeau
… cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry …
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A Collaboration to Improve Plant Genome Annotations Across Species
… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual … its diploid progenitors. Nature Communications 11 (1), 1-16  https://doi.org/10.1038/s41467-020-17302-5 Varoquaux, …
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Examples: Successful LOIs & Submissions
… cryptoendolithic communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission … … CSP Functional Genomics Submission … FICUS Example #1 … FICUS Example #2 …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With … it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we …
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Secondary Metabolites Program
… … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
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Jeremy Schmutz
… co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome … genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., Lovell, … of agronomically valuable loci. Nature Biotechnology 38:1203-1210. Chen, ZJ et al. 2020. Genomic diversifications of …
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