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How Filamentous Fungi Sense Food
… tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was … acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous …
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Tracing the Evolution of Shiitake Mushrooms
Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution … of Energy award 0000238431 to D.H., the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and … FEDER funds) to F.J.R.-D., S.C., and A.T.M., grant PID2019-103901GB-I00 of the Spanish Ministry of Science and …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel … summer research experience at the JGI. On July 26, 2018, the JGI celebrated the culmination of the fifth summer …
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Fungus Fuels Tree Growth
… of Tree and Forest Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing program project … and National Science Foundation (concept ID 10.13039/100000001; grant number DEB 1737898). …
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Microbiome Data Science Team
… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes … urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the next five years. It also includes more than 130 implementation milestones to help track and drive … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Expanding Virophage Diversity
… the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more … has extended the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the … discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many …
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new … Marker genes for diverse methane metabolisms Of the 10 MAGs reconstructed in the study, five were from …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team dubbed … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They looked …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of … information,” Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the … 20 UC Merced students have contributed to the research of 13 JGI scientists through the JGI-UC Merced Genomics …
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