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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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You Can Move, But You Can’t Hide
The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first version of … , which currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower …
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional approaches. … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice …
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Frequently Asked Questions: Proposal Submission
… range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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User Support Analysis Group
… new product types, to the development of automated analysis pipelines for standard sequencing products performed at …
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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi
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Marine Microbe Contains Multitudes
… their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, … JGI Community Science Program . The metagenomes were also processed using the JGI-developed software suite, BBTools , … on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, …
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Partnerships: Myco-Ed
Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … solution for production of high-quality fungal reference genomes, this program is an important initiative that … available datasets encompassing a wide array of fungal genomes, along with curated metadata to enable comprehensive …
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