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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the … the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior …
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Fungal & Algal Program
… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …
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Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
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Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
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Northern peatland microbial communities exhibit resistance to warming and acquire electron acceptors from soil organic matter
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … sequence data generated over the past three decades, their study assesses what fraction of the microbial diversity we …
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Decoding Yellowstone’s Microbial Mats
… it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, … from plants, fungi, algae, non-medical microbes, microbial communities, and other relevant organisms. We …
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Industry Engagement Program
… Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and government institutions — with capabilities that had remained largely unknown and underutilized by industry. When … User Programs entail a competitive, proposal-based process including peer review. The process is streamlined, with …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was … only simplifies and streamlines this process, but enables scientists to conduct fundamental science experiments in … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and …
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RNA-Seq Reveals that Light and Darkness Are Different Stimuli in Freshwater Heterotrophic Actinobacteria
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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is …
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