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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under … allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential …
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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
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Viral Genomics Group
… at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … mechanisms involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate …
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User Advisory Committees
… technology (IT) activities and strategic plan. … The Plant Program Advisory Committee is chartered to offer … Advisory Committee … Informatics User Advisory Committee … Plant Program User Advisory Committee … Prokaryote Programs …
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Natural Prodcast Episode 8: Eric Schmidt
They’re at the base of the animal kingdom, in terms of evolution. Because they’re sitting there, they tend to have … really need to know how they’re made. You need to bring the genes into the lab, and you need to manipulate them in the … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Tracing the Evolution of Shiitake Mushrooms
… decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their evolution could provide strategies for converting plant waste into sugars for  biofuel production. …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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IMG Group
ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a …
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JGI Portals
… to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database … Plant Comparative Genomics portal. Families of related genes representing the modern descendants of ancestral genes …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Cell by cell: population genetics in the wild
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