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Mapping the microbiome milieu
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. sacchariflorus …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … including understanding enzymatic transformations, pathways, and how changes in metabolism can affect ecosystem …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant … that uses a carbon fixation process known as the C4 pathway, which particularly helps plants thrive in warm, … seeds remain atop the plant to be collected.  Association mapping led the team to identify a gene called Less …
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Nandita Nath
Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for … urea showed nitrogen and amino acid-specific metabolic pathways were overrepresented in the nitrate-subjected …
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Metabotyping as a Stopover in Genome-to-Phenome Mapping
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … isotope Carbon-13, researchers can then safely follow the path of that modified chemical in any environment. Organisms … these lines, all with the goals of better data reporting, improved collaboration, and more comparable analysis. A Data …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners … or capabilities in their respective subject area. … The NMDC is tackling existing gaps in microbiome science through …
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Multi-chassis engineering for heterologous production of microbial natural products
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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A single-base resolution map of an archaeal transcriptome
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